I. Doytchinova et S. Petrova, N6-N7 - A MODIFICATION OF THE N6-C8 MODEL FOR THE BINDING-SITE ON ADENOSINE-A1-RECEPTORS WITH IMPROVED STERIC AND ELECTROSTATIC FIT, Medicinal chemistry research, 8(3), 1998, pp. 143-152
A modification of ''N6-C8'' model, named ''N6-N7'', is proposed for th
e binding site on adenosine Al receptor. The steric and electrostatic
fit of the two models is tested on the basis of eight reference compou
nds. The steric fit is assessed by the parameter mean value of the roo
f mean squares RMS(mean) of the distances between two fitted atoms in
fifty six fitting pairs. The electrostatic fit is assessed by the para
meter mean distances between atoms producing areas with negative elect
rostatic potential and between atoms that act as donors in H-bond form
ation. The ''N6-N7'' model demonstrates better steric and electrostati
c fit in comparison with the ''N6-C8'' model.