Tools used in numerical acquisition of epi-fluorescence images are eva
luated. Using multiple-band filter sets, the intensities of blue and r
ed emitting fluorochromes are reduced. Color images may be reconstruct
ed from monochrome images. Nevertheless, they may have X/Y and Z shift
ed and need to be realigned before being superimposed. Confocal laser
scanning microscope (CLSM) presents an advantage mainly for 3D microsc
opy of thick specimens. Apart from camera performances, user interface
is a key point in image acquisition.