The development of DNA-based markers has had a revolutionary impact on
gene mapping and, more generally, on all of animal and plant genetics
. With DNA-based markers, it is theoretically possible to exploit the
entire diversity in DNA sequence that exists in any cross. For this re
ason, high resolution genetic maps are being developed at an unprecede
nted speed. The most commonly used DNA-based markers include those bas
ed on a cloned and (usually) sequenced DNA fragment and other, more ra
ndom, assays for genetic polymorphism that can be grouped under the he
ading of fingerprint markers. The advantages and disadvantages of the
various marker types are discussed, along with their application to th
e reference chicken genetic linkage maps and to the search for quantit
ative trait loci (QTL). The prospects for the use of DNA-based markers
in marker-assisted selection are considered, along with likely future
trends in poultry gene mapping. Further development of both physical
and linkage genome maps of the chicken will allow animal scientists to
more efficiently detect and characterize QTL and will provide them ac
cess to the wealth of genetic information that is being generated abou
t the human genome and the genomes of model species, such as the mouse
and Drosophila.